Użytkowniczka:Ask/lista: Różnice pomiędzy wersjami
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(Utworzył nową stronę „Do za. *CFOUR [http://www.cfour.de/] *SIESTA *DALI [http://ekhidna.biocenter.helsinki.fi/dali_lite/downloads/v3/] *Mayavi [http://code.enthought.com/pr...”) |
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| (Nie pokazano 11 pośrednich wersji utworzonych przez tego samego użytkownika) | |||
| Linia 1: | Linia 1: | ||
Do za. | Do za. | ||
| − | *[[ | + | *[[BigDFT]] (GPU support, PRACE) |
| − | *[[ | + | *[[CP2K]] (PRACE) |
| + | *[[Crystal]] | ||
| + | *[[Amber]] | ||
| + | *[[Firefly]] (problem z linkowaniem) | ||
*[[DALI]] [http://ekhidna.biocenter.helsinki.fi/dali_lite/downloads/v3/] | *[[DALI]] [http://ekhidna.biocenter.helsinki.fi/dali_lite/downloads/v3/] | ||
*[[Mayavi]] [http://code.enthought.com/projects/mayavi/] | *[[Mayavi]] [http://code.enthought.com/projects/mayavi/] | ||
| − | |||
* [[Rosetta]][http://www.rosettacommons.org/software/index.html] | * [[Rosetta]][http://www.rosettacommons.org/software/index.html] | ||
| − | |||
* [[pymol]] [http://www.pymolwiki.org] (Molecular Graphics System PyMOL is a molecular graphics system targetted at medium to large biomolecules like proteins. It can generate high-quality publication-ready molecular graphics images and animations. Features include: * Visualization of molecules, molecular trajectories and surfaces of crystallography data or orbitals * Molecular builder and sculptor * Internal raytracer and movie generator * Fully extensible and scriptable via a Python interface. File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps.) | * [[pymol]] [http://www.pymolwiki.org] (Molecular Graphics System PyMOL is a molecular graphics system targetted at medium to large biomolecules like proteins. It can generate high-quality publication-ready molecular graphics images and animations. Features include: * Visualization of molecules, molecular trajectories and surfaces of crystallography data or orbitals * Molecular builder and sculptor * Internal raytracer and movie generator * Fully extensible and scriptable via a Python interface. File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps.) | ||
| + | * [[Lumerical FDTD]] [http://www.lumerical.com/fdtd_parallel_description.php] | ||
| + | Do akt. apl. | ||
| − | |||
| − | |||
* [[ProtoMol]] (2.1.1 -> 3.2) | * [[ProtoMol]] (2.1.1 -> 3.2) | ||
| + | * [[Gromacs]] (4.5.1 -> 4.5.2) | ||
| + | * [[SIESTA]] (2 -> 3) | ||
Do akt. opis | Do akt. opis | ||
* [[FreeFEM]] | * [[FreeFEM]] | ||
| − | + | * [[NWChem]] | |
Do op. | Do op. | ||
*[[Allinea DDT]] | *[[Allinea DDT]] | ||
| + | * [[ANSYS]] - dla mechaników, na razie udostępniamy licencję, w lutym przechodzimy na krajową i wtedy zaplanować inst. | ||
*[[APBS]] [http://www.poissonboltzmann.org/apbs/] | *[[APBS]] [http://www.poissonboltzmann.org/apbs/] | ||
*[[Camfr]] | *[[Camfr]] | ||
| − | *[[ | + | *[[CFOUR]] [http://www.cfour.de/] |
*[[Hmmer]] | *[[Hmmer]] | ||
*[[Matlab]] (knitro) | *[[Matlab]] (knitro) | ||
| + | *[[MOPAC]] (stara wersja, .f, nowa płatna) | ||
*[[MPB]] | *[[MPB]] | ||
*[[OpenBabel]] | *[[OpenBabel]] | ||
* [[Xaim]] [http://www.quimica.urv.es/XAIM/] | * [[Xaim]] [http://www.quimica.urv.es/XAIM/] | ||
| + | * [[LAMMPS]] | ||
| + | * [[t-coffee]] | ||
| + | * [[ARPACK]], [[FFTW]], [[GSL]], [http://pl.wikipedia.org/wiki/GNU_Multiple_Precision_Arithmetic_Library GMP], [[MPFR]], [[MPC]] | ||
| + | * [[OFED]] | ||
| + | * I/O libs: [[NetPBM]], [[NetCDF]], [[HDF5]] | ||
Komercyjne: | Komercyjne: | ||
* http://www.molegro.com/products.php | * http://www.molegro.com/products.php | ||
| + | * [[COMSOL]] (http://www.comsol.com/products/multiphysics/) - platon, może kdm? | ||
| + | |||
| + | Ze wsparciem dla GPU | ||
| + | * [[AutoDock]] [http://sourceforge.net/projects/gpuautodock/files/gpuautodock/GPUAUTODOCK.1.0.0/ gpuautodock na sourceforge] | ||
Aktualna wersja na dzień 12:43, 9 cze 2011
Do za.
- BigDFT (GPU support, PRACE)
- CP2K (PRACE)
- Crystal
- Amber
- Firefly (problem z linkowaniem)
- DALI [1]
- Mayavi [2]
- Rosetta[3]
- pymol [4] (Molecular Graphics System PyMOL is a molecular graphics system targetted at medium to large biomolecules like proteins. It can generate high-quality publication-ready molecular graphics images and animations. Features include: * Visualization of molecules, molecular trajectories and surfaces of crystallography data or orbitals * Molecular builder and sculptor * Internal raytracer and movie generator * Fully extensible and scriptable via a Python interface. File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps.)
- Lumerical FDTD [5]
Do akt. apl.
Do akt. opis
Do op.
- Allinea DDT
- ANSYS - dla mechaników, na razie udostępniamy licencję, w lutym przechodzimy na krajową i wtedy zaplanować inst.
- APBS [6]
- Camfr
- CFOUR [7]
- Hmmer
- Matlab (knitro)
- MOPAC (stara wersja, .f, nowa płatna)
- MPB
- OpenBabel
- Xaim [8]
- LAMMPS
- t-coffee
- ARPACK, FFTW, GSL, GMP, MPFR, MPC
- OFED
- I/O libs: NetPBM, NetCDF, HDF5
Komercyjne:
- http://www.molegro.com/products.php
- COMSOL (http://www.comsol.com/products/multiphysics/) - platon, może kdm?
Ze wsparciem dla GPU